U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    PGTG_10639 U1 small nuclear ribonucleoprotein C [ Puccinia graminis f. sp. tritici CRL 75-36-700-3 ]

    Gene ID: 10545523, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PGTG_10639
    Gene description
    U1 small nuclear ribonucleoprotein C
    Locus tag
    PGTG_10639
    See related
    FungiDB:PGTG_10639; VEuPathDB:PGTG_10639
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Puccinia graminis f. sp. tritici CRL 75-36-700-3 (strain: CRL 75-36-700-3, forma-specialis: tritici CRL 75-36-700-3)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PGTG_10639 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    5

    NW_003526576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_003526576.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci. Cuomo CA, et al. G3 (Bethesda), 2017 Feb 9. PMID 27913634, Free PMC Article
    2. Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Duplessis S, et al. Proc Natl Acad Sci U S A, 2011 May 31. PMID 21536894, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pre-mRNA 5'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    U1 small nuclear ribonucleoprotein C

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003526576.1 Reference assembly

      Range
      804935..806290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003328632.2 → XP_003328680.1  U1 small nuclear ribonucleoprotein C [Puccinia graminis f. sp. tritici CRL 75-36-700-3]

      See identical proteins and their annotated locations for XP_003328680.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      E3KIY6
      Conserved Domains (1) summary
      pfam06220
      Location:1 → 38
      zf-U1; U1 zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E3KIY6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases