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    IHO1 interactor of HORMAD1 1 [ Equus caballus (horse) ]

    Gene ID: 100062976, updated on 18-Dec-2024

    Summary

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    Official Symbol
    IHO1provided by VGNC
    Official Full Name
    interactor of HORMAD1 1provided by VGNC
    Primary source
    VGNC:VGNC:16162
    See related
    Ensembl:ENSECAG00000057595
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Also known as
    CCDC36
    Orthologs
    human mouse all
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    Genomic context

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    See IHO1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current TB-T2T (GCF_041296265.1) 16 NC_091699.1 (49216235..49255304, complement)
    RS_2024_08 previous assembly EquCab3.0 (GCF_002863925.1) 16 NC_009159.3 (39393274..39431255, complement)

    Chromosome 16 - NC_091699.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102148250 Neighboring gene ubiquitin specific peptidase 4 Neighboring gene chromosome 16 C3orf62 homolog Neighboring gene chromosome 16 C3orf84 homolog Neighboring gene kelch domain containing 8B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Thoroughbred Stallion gene expression
    • BioProject: PRJEB53382
    • Analysis date: Mon Jan 06 09:53:19 2025

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homologous chromosome pairing at meiosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meiotic DNA double-strand break formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in condensed nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interactor of HORMAD1 protein 1
    Names
    coiled-coil domain containing 36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_041296265.1-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TB-T2T Primary Assembly

    Genomic

    1. NC_091699.1 Reference TB-T2T Primary Assembly

      Range
      49216235..49255304 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001494366.7 → XP_001494416.2  interactor of HORMAD1 protein 1

      See identical proteins and their annotated locations for XP_001494416.2

      UniProtKB/TrEMBL
      A0A9L0T5Y0
      Related
      ENSECAP00000082506.1
      Conserved Domains (1) summary
      pfam15771
      Location:19 → 592
      DUF4700; Domain of unknown function (DUF4700)

    2. XM_023620440.2 → XP_023476208.1  interactor of HORMAD1 protein 1

      UniProtKB/TrEMBL
      A0A9L0T5Y0
      Conserved Domains (1) summary
      pfam15771
      Location:19 → 592
      DUF4700; Domain of unknown function (DUF4700)

    3. XM_070237619.1 → XP_070093720.1  interactor of HORMAD1 protein 1

    4. XM_070237617.1 → XP_070093718.1  interactor of HORMAD1 protein 1

    5. XM_070237618.1 → XP_070093719.1  interactor of HORMAD1 protein 1

    6. XM_070237620.1 → XP_070093721.1  interactor of HORMAD1 protein 1

    7. XM_023620439.2 → XP_023476207.1  interactor of HORMAD1 protein 1

      UniProtKB/TrEMBL
      A0A9L0T5Y0
      Conserved Domains (1) summary
      pfam15771
      Location:19 → 592
      DUF4700; Domain of unknown function (DUF4700)

    8. XM_070237616.1 → XP_070093717.1  interactor of HORMAD1 protein 1

    Nucleotide Protein
    Heading Accession and Version

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