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    Snx19 sorting nexin 19 [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101700976, updated on 3-Dec-2024

    Summary

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    Gene symbol
    Snx19
    Gene description
    sorting nexin 19
    Locus tag
    GW7_11941
    See related
    Ensembl:ENSHGLG00000001442
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    See Snx19 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624812.1 (5328091..5381537, complement)

    NW_004624812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110345445 Neighboring gene translationally-controlled tumor protein Neighboring gene POU domain, class 2, transcription factor 1-like Neighboring gene uncharacterized LOC110345446

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624812 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-19
    Names
    Sorting nexin-19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624812.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      5328091..5381537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004862646.3 → XP_004862703.1  sorting nexin-19 isoform X1

      See identical proteins and their annotated locations for XP_004862703.1

      UniProtKB/TrEMBL
      G5BLU4
      Related
      ENSHGLP00000001889.1, ENSHGLT00000001935.1
      Conserved Domains (3) summary
      cd06893
      Location:537 → 664
      PX_SNX19; The phosphoinositide binding Phox Homology domain of Sorting Nexin 19
      smart00313
      Location:95 → 273
      PXA; Domain associated with PX domains
      pfam08628
      Location:849 → 946
      Nexin_C; Sorting nexin C terminal

    2. XM_021242766.1 → XP_021098425.1  sorting nexin-19 isoform X2

      UniProtKB/TrEMBL
      A0AAX6RSY0
      Conserved Domains (2) summary
      cd06893
      Location:537 → 664
      PX_SNX19; The phosphoinositide binding Phox Homology domain of Sorting Nexin 19
      smart00313
      Location:95 → 273
      PXA; Domain associated with PX domains
    Nucleotide Protein
    Heading Accession and Version

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