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    LOC138525547 lysozyme g-like [ Ambystoma mexicanum (axolotl) ]

    Gene ID: 138525547, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC138525547
    Gene description
    lysozyme g-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ambystoma mexicanum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Caudata; Salamandroidea; Ambystomatidae; Ambystoma
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    Genomic context

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    See LOC138525547 in Genome Data Viewer
    Location:
    chromosome: 7p
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_10 current UKY_AmexF1_1 (GCF_040938575.1) 7p NC_090939.1 (645694069..645706610, complement)

    Chromosome 7p - NC_090939.1Genomic Context describing neighboring genes Neighboring gene microtubule interacting and trafficking domain containing 1 Neighboring gene lysozyme g-like Neighboring gene lysozyme g-like Neighboring gene lysozyme g-like Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_090939.1 Chromosome 7p Reference UKY_AmexF1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning, sequence analysis and phylogeny of first caudata g-type lysozyme in axolotl (Ambystoma mexicanum). Yu H, et al. Zoolog Sci, 2013 Nov. PMID 24199859
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lysozyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to Gram-positive bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidoglycan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysozyme g-like
    Names
    G-type lysozyme

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040938575.1-RS_2024_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UKY_AmexF1_1 Primary Assembly

    Genomic

    1. NC_090939.1 Reference UKY_AmexF1_1 Primary Assembly

      Range
      645694069..645706610 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_069635593.1 → XP_069491694.1  lysozyme g-like

      UniProtKB/TrEMBL
      G8I0D0
    Nucleotide Protein
    Heading Accession and Version