U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC100820574 phosphoenolpyruvate carboxylase, housekeeping isozyme-like [ Glycine max (soybean) ]

    Gene ID: 100820574, updated on 3-Feb-2025

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100820574
    Gene description
    phosphoenolpyruvate carboxylase, housekeeping isozyme-like
    Locus tag
    GLYMA_06G229900v4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    Gmppc2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100820574 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2025_01 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (34739350..34747925)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (35345825..35354028)

    Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene uncharacterized LOC102664616 Neighboring gene probable pectinesterase 53 Neighboring gene uncharacterized LOC102667689

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphoenolpyruvate carboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbon fixation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leaf development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    phosphoenolpyruvate carboxylase, housekeeping isozyme-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001317530.1 → NP_001304459.1  phosphoenolpyruvate carboxylase, housekeeping isozyme-like

      Status: PROVISIONAL

      Source sequence(s)
      LC006107
      UniProtKB/TrEMBL
      I1KDL4, O22117
      Conserved Domains (1) summary
      pfam00311
      Location:163 → 967
      PEPcase; Phosphoenolpyruvate carboxylase

    RefSeqs of Annotated Genomes: GCF_000004515.6-RS_2025_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      34739350..34747925
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041016034.1 → XP_040871968.1  phosphoenolpyruvate carboxylase, housekeeping isozyme-like isoform X1

      UniProtKB/TrEMBL
      I1KDL4, O22117
      Conserved Domains (1) summary
      pfam00311
      Location:163 → 967
      PEPcase; Phosphoenolpyruvate carboxylase

    2. XM_041016036.1 → XP_040871970.1  phosphoenolpyruvate carboxylase, housekeeping isozyme-like isoform X1

      UniProtKB/TrEMBL
      I1KDL4, O22117
      Conserved Domains (1) summary
      pfam00311
      Location:163 → 967
      PEPcase; Phosphoenolpyruvate carboxylase

    3. XM_003527159.4 → XP_003527207.1  phosphoenolpyruvate carboxylase, housekeeping isozyme-like isoform X1

      See identical proteins and their annotated locations for XP_003527207.1

      UniProtKB/TrEMBL
      I1KDL4, O22117
      Conserved Domains (1) summary
      pfam00311
      Location:163 → 967
      PEPcase; Phosphoenolpyruvate carboxylase

    4. XM_006582062.4 → XP_006582125.1  phosphoenolpyruvate carboxylase, housekeeping isozyme-like isoform X2

      UniProtKB/TrEMBL
      A0A0R0JT01
      Conserved Domains (1) summary
      cl21521
      Location:163 → 748
      PEPcase; Phosphoenolpyruvate carboxylase

    5. XM_041016035.1 → XP_040871969.1  phosphoenolpyruvate carboxylase, housekeeping isozyme-like isoform X1

      UniProtKB/TrEMBL
      I1KDL4, O22117
      Conserved Domains (1) summary
      pfam00311
      Location:163 → 967
      PEPcase; Phosphoenolpyruvate carboxylase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.