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    LOC100789839 RNA-binding protein 39 [ Glycine max (soybean) ]

    Gene ID: 100789839, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100789839
    Gene description
    RNA-binding protein 39
    Locus tag
    GLYMA_10G282400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100789839 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (50395107..50403784, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (50323276..50331951, complement)

    Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene monooxygenase 2 Neighboring gene monooxygenase 2 Neighboring gene translation initiation factor IF3-1, mitochondrial Neighboring gene probable protein phosphatase 2C 64

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 39

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      50395107..50403784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003536671.5 → XP_003536719.1  RNA-binding protein 39 isoform X1

      UniProtKB/TrEMBL
      K7LLY3
      Conserved Domains (1) summary
      TIGR01622
      Location:63 → 596
      SF-CC1; splicing factor, CC1-like family

    2. XM_041006010.1 → XP_040861944.1  RNA-binding protein 39 isoform X3

      Conserved Domains (1) summary
      TIGR01622
      Location:1 → 341
      SF-CC1; splicing factor, CC1-like family

    3. XM_041006009.1 → XP_040861943.1  RNA-binding protein 39 isoform X2

      Conserved Domains (1) summary
      TIGR01622
      Location:66 → 460
      SF-CC1; splicing factor, CC1-like family

    4. XM_041006008.1 → XP_040861942.1  RNA-binding protein 39 isoform X2

      Conserved Domains (1) summary
      TIGR01622
      Location:66 → 460
      SF-CC1; splicing factor, CC1-like family

    5. XM_041006007.1 → XP_040861941.1  RNA-binding protein 39 isoform X2

      Conserved Domains (1) summary
      TIGR01622
      Location:66 → 460
      SF-CC1; splicing factor, CC1-like family

    6. XM_026124193.2 → XP_025979978.1  RNA-binding protein 39 isoform X3

      Conserved Domains (1) summary
      TIGR01622
      Location:1 → 341
      SF-CC1; splicing factor, CC1-like family
    Nucleotide Protein
    Heading Accession and Version

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