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    LOC100842943 phosphoenolpyruvate carboxylase 2 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100842943, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100842943
    Gene description
    phosphoenolpyruvate carboxylase 2
    Locus tag
    BRADI_2g06620v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100842943 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (5068620..5072705)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (5068216..5072087)

    Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like Neighboring gene SCAR-like protein 2 Neighboring gene dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase Neighboring gene polyadenylate-binding protein-interacting protein 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphoenolpyruvate carboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbon fixation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leaf development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoenolpyruvate carboxylase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      5068620..5072705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003565281.4 → XP_003565329.1  phosphoenolpyruvate carboxylase 2

      UniProtKB/TrEMBL
      I1HD61
      Conserved Domains (2) summary
      COG2352
      Location:72 → 1006
      Ppc; Phosphoenolpyruvate carboxylase [Energy production and conversion]
      pfam00311
      Location:204 → 1006
      PEPcase; Phosphoenolpyruvate carboxylase
    Nucleotide Protein Strain
    Heading Accession and Version

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