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    LOC100256872 adenylate kinase 5, chloroplastic [ Vitis vinifera (wine grape) ]

    Gene ID: 100256872, updated on 19-Jun-2024

    Summary

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    Gene symbol
    LOC100256872
    Gene description
    adenylate kinase 5, chloroplastic
    Locus tag
    VIT_00001035001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0016301 GO:0016740 GO:0004017 GO:0019201 GO:0000166 GO:0005524 GO:0006139 GO:0009165
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    Genomic context

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    See LOC100256872 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 11 NC_081815.1 (6710485..6735646)
    102 previous assembly 12X (GCF_000003745.3) 11 NC_012017.3 (6707795..6733185)

    Chromosome 11 - NC_081815.1Genomic Context describing neighboring genes Neighboring gene ribosome biogenesis protein BRX1 homolog 2-like Neighboring gene transmembrane 9 superfamily member 11 Neighboring gene hexose transporter 7 Neighboring gene sugar transport protein 7-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables (d)CMP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables adenylate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleoside diphosphate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleoside triphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    adenylate kinase 5, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081815.1 Reference ASM3070453v1 Primary Assembly

      Range
      6710485..6735646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002264779.5 → XP_002264815.2  adenylate kinase 5, chloroplastic

      UniProtKB/TrEMBL
      F6HCJ8
      Conserved Domains (3) summary
      PLN02842
      Location:80 → 595
      PLN02842; nucleotide kinase
      cd01428
      Location:78 → 271
      ADK; Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for ...
      pfam09353
      Location:332 → 568
      DUF1995; Domain of unknown function (DUF1995)
    Nucleotide Protein
    Heading Accession and Version

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