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    VPS54 VPS54 subunit of GARP complex [ Gallus gallus (chicken) ]

    Gene ID: 421280, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VPS54provided by CGNC
    Official Full Name
    VPS54 subunit of GARP complexprovided by CGNC
    Primary source
    CGNC:6715
    See related
    Ensembl:ENSGALG00010018923
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See VPS54 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (9762364..9805229, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (9707619..9750435, complement)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110489 Neighboring gene malate dehydrogenase 1 Neighboring gene UDP-glucose pyrophosphorylase 2 Neighboring gene pellino E3 ubiquitin protein ligase family member 3 Neighboring gene uncharacterized LOC121110490

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 54
    Names
    VPS54, GARP complex subunit
    vacuolar protein sorting 54 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      9762364..9805229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_419349.8 → XP_419349.3  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8J9, E1BRC0
      Related
      ENSGALP00010027298.1, ENSGALT00010045792.1
      Conserved Domains (1) summary
      pfam07928
      Location:733 → 864
      Vps54; Vps54-like protein

    2. XM_040697505.2 → XP_040553439.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8J9, E1BRC0
      Conserved Domains (1) summary
      pfam07928
      Location:733 → 864
      Vps54; Vps54-like protein

    3. XM_040697504.2 → XP_040553438.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8J9, E1BRC0
      Related
      ENSGALP00010027294.1, ENSGALT00010045788.1
      Conserved Domains (1) summary
      pfam07928
      Location:733 → 864
      Vps54; Vps54-like protein

    4. XM_040697506.2 → XP_040553440.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8J9, E1BRC0
      Conserved Domains (1) summary
      pfam07928
      Location:733 → 864
      Vps54; Vps54-like protein

    5. XM_015278096.4 → XP_015133582.1  vacuolar protein sorting-associated protein 54 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8J9
      Conserved Domains (2) summary
      pfam07928
      Location:568 → 698
      Vps54; Vps54-like protein
      cl19297
      Location:41 → 165
      Dor1; Dor1-like family

    RNA

    1. XR_005858176.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9707619..9750435 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040668936.2 → XP_040524870.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8J9

    2. XM_040668935.2 → XP_040524869.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8J9

    3. XM_040668934.2 → XP_040524868.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8J9

    4. XM_040668937.2 → XP_040524871.1  vacuolar protein sorting-associated protein 54 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8J9

    5. XM_040668938.2 → XP_040524872.1  vacuolar protein sorting-associated protein 54 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8J9

    RNA

    1. XR_005848865.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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