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    KAFR0E01990 U4/U6-U5 snRNP complex subunit LSM8 [ Kazachstania africana CBS 2517 ]

    Gene ID: 13883010, updated on 6-Dec-2024

    Summary

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    Gene symbol
    KAFR0E01990
    Gene description
    U4/U6-U5 snRNP complex subunit LSM8
    Locus tag
    KAFR_0E01990
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Kazachstania africana CBS 2517 (strain: type strain:CBS 2517)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kazachstania
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    Genomic context

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    See KAFR0E01990 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_018944.1 (395511..395834)

    Chromosome 5 - NC_018944.1Genomic Context describing neighboring genes Neighboring gene palmitoyl-CoA hydrolase Neighboring gene uncharacterized protein Neighboring gene methylthioribulose 1-phosphate dehydratase MDE1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_018944.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Gordon JL, et al. Proc Natl Acad Sci U S A, 2011 Dec 13. PMID 22123960, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U4/U6-U5 snRNP complex subunit LSM8
    XP_003957487.1
    • similar to Saccharomyces cerevisiae LSM8 (YJR022W); ancestral locus Anc_5.130

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_018944.1 Reference assembly

      Range
      395511..395834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003957438.1 → XP_003957487.1  U4/U6-U5 snRNP complex subunit LSM8 [Kazachstania africana CBS 2517]

      See identical proteins and their annotated locations for XP_003957487.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      H2AVF2
      Conserved Domains (1) summary
      cd01727
      Location:2 → 74
      LSm8; Like-Sm protein 8
    Nucleotide Protein
    Heading Accession and Version

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