ttll9 tubulin tyrosine ligase-like family, member 9 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ttll9provided by ZNC
Official Full Name: tubulin tyrosine ligase-like family, member 9provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-1582
See related: Ensembl:ENSDARG00000062806 AllianceGenome:ZFIN:ZDB-GENE-030131-1582
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb75c08; wu:fb75c08; si:dkey-211h10.2
Summary: Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in flagellated sperm motility and microtubule cytoskeleton organization. Predicted to act upstream of or within protein modification process. Predicted to be active in ciliary basal body. Orthologous to human TTLL9 (tubulin tyrosine ligase like 9). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (12134799..12150657)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (12199770..12216621)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ligase activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables tubulin binding	IBA Inferred from Biological aspect of Ancestor more info
enables tubulin-glutamic acid ligase activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in flagellated sperm motility	IBA Inferred from Biological aspect of Ancestor more info
involved_in microtubule cytoskeleton organization	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within protein modification process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in ciliary basal body	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: probable tubulin polyglutamylase TTLL9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001256764.1 → NP_001243693.1 probable tubulin polyglutamylase TTLL9

Status: VALIDATED

Source sequence(s)

BC115266, EB915998

UniProtKB/TrEMBL

A0A8M1P4L6, F1QT18, Q1RLV9

Related

ENSDARP00000108447.2, ENSDART00000128551.4

Conserved Domains (1) summary

pfam03133
Location:76 → 367

TTL; Tubulin-tyrosine ligase family