T01D3.6 IgGFc-binding protein-like [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: T01D3.6
Official Full Name: IgGFc-binding protein-like
Primary source: WormBase:WBGene00011330
Locus tag: CELE_T01D3.6
See related: AllianceGenome:WB:WBGene00011330
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable calcium ion binding activity and serine-type endopeptidase inhibitor activity. Predicted to be located in extracellular region. Orthologous to human ZAN (zonadhesin). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See T01D3.6 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 9

Sequence:: Chromosome: V; NC_003283.11 (13716824..13720414)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

T01D3.6 (e-PCR)
- UniSTS:321660

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info
enables serine-type endopeptidase inhibitor activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: IgGFc-binding protein-like

NP_506394.1

Confirmed by transcript evidence

NP_506395.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

13716824..13720414

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_073994.2 → NP_506395.1 IgGFc-binding protein-like [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_506395.1

Status: REVIEWED

UniProtKB/TrEMBL

G5EEP7

Conserved Domains (4) summary

smart00179
Location:615 → 651

EGF_CA; Calcium-binding EGF-like domain

smart00216
Location:179 → 351

VWD; von Willebrand factor (vWF) type D domain

pfam01826
Location:489 → 546

TIL; Trypsin Inhibitor like cysteine rich domain

cl00085
Location:655 → 906

FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
NM_073993.4 → NP_506394.1 IgGFc-binding protein-like [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_506394.1

Status: REVIEWED

UniProtKB/TrEMBL

G5EDT4

Conserved Domains (4) summary

smart00179
Location:627 → 663

EGF_CA; Calcium-binding EGF-like domain

smart00216
Location:179 → 351

VWD; von Willebrand factor (vWF) type D domain

pfam01826
Location:501 → 558

TIL; Trypsin Inhibitor like cysteine rich domain

cl00085
Location:667 → 918

FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...