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    LOC100986203 histone-lysine N-methyltransferase SETMAR [ Pan paniscus (pygmy chimpanzee) ]

    Gene ID: 100986203, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC100986203
    Gene description
    histone-lysine N-methyltransferase SETMAR
    See related
    Ensembl:ENSPPAG00000039860
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan paniscus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    SETMAR
    Orthologs
    human mouse all
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    Genomic context

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    See LOC100986203 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 2 NC_085926.1 (4314856..4328889)
    RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 3 NC_073252.1 (4318118..4333649)

    Chromosome 2 - NC_085926.1Genomic Context describing neighboring genes Neighboring gene tigger transposable element-derived protein 1-like Neighboring gene sulfatase modifying factor 1 Neighboring gene leucine rich repeat neuronal 1 Neighboring gene polyribonucleotide nucleotidyltransferase 1, mitochondrial-like Neighboring gene uncharacterized LOC134729876 Neighboring gene U7 small nuclear RNA Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene uncharacterized LOC129397370

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA topoisomerase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K36 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA endodeoxyribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA double-strand break processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic DNA integrity checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in condensed chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase SETMAR
    Names
    SET domain and mariner transposase fusion

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Genomic

    1. NC_085926.1 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

      Range
      4314856..4328889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003831222.7 → XP_003831270.1  histone-lysine N-methyltransferase SETMAR isoform X1

      See identical proteins and their annotated locations for XP_003831270.1

      UniProtKB/TrEMBL
      A0A2R9BWD0
      Related
      ENSPPAP00000033988.1
      Conserved Domains (4) summary
      smart00317
      Location:139 → 268
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      pfam01359
      Location:501 → 580
      Transposase_1; Transposase (partial DDE domain)
      pfam13565
      Location:385 → 447
      HTH_32; Homeodomain-like domain
      cl02622
      Location:27 → 123
      Pre-SET; Pre-SET motif

    2. XM_063602091.1 → XP_063458161.1  histone-lysine N-methyltransferase SETMAR isoform X2

      UniProtKB/TrEMBL
      A0A2R9BWD5

    3. XM_057301595.2 → XP_057157578.1  histone-lysine N-methyltransferase SETMAR isoform X4

    4. XM_057301594.2 → XP_057157577.1  histone-lysine N-methyltransferase SETMAR isoform X3

    Nucleotide Protein
    Heading Accession and Version

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