GLIPR1 GLI pathogenesis related 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: GLIPR1provided by VGNC
Official Full Name: GLI pathogenesis related 1provided by VGNC
Primary source: VGNC:VGNC:8411
Locus tag: CK820_G0020334
See related: Ensembl:ENSPTRG00000005237
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	10	NC_072408.2 (82248818..82270307)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	12	NC_072410.1 (80867300..80888310)

Chromosome 10 - NC_072408.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

STS-H56474 (e-PCR)
- UniSTS:29485

RH47132 (e-PCR)
- UniSTS:4654

D12S1480E (e-PCR)
- UniSTS:153934

RH18004 (e-PCR)
- UniSTS:70991

RH149 (e-PCR)
- UniSTS:25945

RH46985 (e-PCR)
- UniSTS:67458

G35331 (e-PCR)
- UniSTS:79550

SHGC-31221 (e-PCR)
- UniSTS:52196

RH102666 (e-PCR)
- UniSTS:97000

D20S989 (e-PCR)
- UniSTS:154601

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info	PubMed
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: glioma pathogenesis-related protein 1

Names: GLI pathogenesis-related 1 (glioma); glioma pathogenesis-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

82248818..82270307

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009425866.5 → XP_009424141.1 glioma pathogenesis-related protein 1

See identical proteins and their annotated locations for XP_009424141.1

UniProtKB/TrEMBL

A0A2J8MJ41, A0A6D2X001, H2Q6I0

Related

ENSPTRP00000008897.3

Conserved Domains (1) summary

cd05385
Location:32 → 178

SCP_GLIPR-1_like; SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich ...