U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    epd ependymin [ Esox lucius (northern pike) ]

    Gene ID: 105025994, updated on 18-Jun-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    epd
    Gene description
    ependymin
    See related
    Ensembl:ENSELUG00000008157
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Esox lucius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See epd in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current fEsoLuc1.pri (GCF_011004845.1) 7 NC_047575.1 (20010615..20013133)
    103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG07 NC_025974.4 (30948718..30951236, complement)

    Chromosome 7 - NC_047575.1Genomic Context describing neighboring genes Neighboring gene myosin Ic, paralog a Neighboring gene uncharacterized LOC109615981 Neighboring gene pannexin 1b Neighboring gene CWC15 spliceosome associated protein homolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ependymin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001311009.1 → NP_001297938.1  ependymin precursor

      See identical proteins and their annotated locations for NP_001297938.1

      Status: PROVISIONAL

      Source sequence(s)
      L09066
      UniProtKB/Swiss-Prot
      P32188
      UniProtKB/TrEMBL
      A0A3P8ZQ76
      Related
      ENSELUP00000030795.1, ENSELUT00000007400.3
      Conserved Domains (1) summary
      smart00026
      Location:31 → 220
      EPEND; Ependymins

    RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEsoLuc1.pri Primary Assembly

    Genomic

    1. NC_047575.1 Reference fEsoLuc1.pri Primary Assembly

      Range
      20010615..20013133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P32188.1 GenPept UniProtKB/Swiss-Prot:P32188

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases