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    ARID/BRIGHT DNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823399, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARID/BRIGHT DNA-binding domain-containing protein
    Primary source
    TAIR:AT3G43240
    Locus tag
    AT3G43240
    See related
    Araport:AT3G43240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (15209831..15214947, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ATP binding microtubule motor family protein Neighboring gene Phosphoinositide phosphatase family protein Neighboring gene RING/FYVE/PHD-type zinc finger family protein Neighboring gene coiled-coil protein (DUF572) Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Tan LM, et al. Plant Cell, 2020 Jul. PMID 32358072, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis.
      Title: Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114192.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ARID/BRIGHT DNA-binding domain-containing protein
    NP_189910.2
    • ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: DNA binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); Has 133 Blast hits to 125 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 9; Plants - 99; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      15209831..15214947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114192.4 → NP_189910.2  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189910.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQ79, Q9LXL0
      UniProtKB/TrEMBL
      A0A178VGN5, A0A5S9XI73, A0A654FE87
      Conserved Domains (2) summary
      smart01014
      Location:569 → 666
      ARID; ARID/BRIGHT DNA binding domain
      cd15615
      Location:676 → 727
      PHD_ARID4_like; PHD finger found in Arabidopsis thaliana AT-rich interactive domain-containing protein 4 (ARID4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NQ79.1

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