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    ydiB quinate/shikimate dehydrogenase [ Shigella dysenteriae ]

    Gene ID: 75171755, updated on 3-Dec-2024

    Summary

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    Gene symbol
    ydiB
    Gene description
    quinate/shikimate dehydrogenase
    Locus tag
    HUZ68_RS12175
    Gene type
    protein coding
    Organism
    Shigella dysenteriae (strain: SWHEFF_49)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
    Old locus tag
    HUZ68_12045
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    Genomic context

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    NZ_CP055055.1Genomic Context describing neighboring genes Neighboring gene MFS transporter Neighboring gene MFS transporter Neighboring gene type I 3-dehydroquinate dehydratase Neighboring gene acyl CoA:acetate/3-ketoacid CoA transferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP055055.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Shikimate dehydrogenase structure reveals novel fold. Vogan E. Structure, 2003 Aug. PMID 12906820
    2. Site-directed mutagenesis of the active site region in the quinate/shikimate 5-dehydrogenase YdiB of Escherichia coli. Lindner HA, et al. J Biol Chem, 2005 Feb 25. PMID 15596430
    3. Transcriptome analysis of a shikimic acid producing strain of Escherichia coli W3110 grown under carbon- and phosphate-limited conditions. Johansson L, et al. J Biotechnol, 2006 Dec 1. PMID 16828913
    4. High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria. Che Y, et al. Microbiome, 2022 Jan 25. PMID 35078531, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    quinate/shikimate dehydrogenase
    WP_000383469.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP055055.1 Reference assembly

      Range
      2551941..2552807
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_000383469.1 MULTISPECIES: quinate/shikimate dehydrogenase [Enterobacteriaceae]

      See identical proteins and their annotated locations for WP_000383469.1

      UniProtKB/Swiss-Prot
      A8A0N8, B1IQ64, B1XG00, B2U2J6, B7MVG8, C4ZYF4, P0A6D5, P0A6D6, P0C2L9, P28244, P77647
      UniProtKB/TrEMBL
      A0A0J3Y4Z4, A0A140NB88, A0A1X3I771, A0A1X3IYV9, A0A1X3JGJ9, A0A236RTQ7, A0A2A2XRE8, A0A380AVW8, A0A3P6LTF5, A0A7I0KPD0, A0A7W4KJ91, A0A7Z8BGW3, A0A829L0E4, A0AAD2NT51, A0AAN3MDY4, D3GUI3, F4SYR7, I6E8C0, J7QES8, S1PYY0, W1XDR4
      Conserved Domains (1) summary
      PRK12749
      Location:1 → 288
      PRK12749; quinate/shikimate dehydrogenase; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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