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    CEH00_RS16955 YbdK family carboxylate-amine ligase [ Shigella boydii ]

    Gene ID: 75205059, updated on 3-Dec-2024

    Summary

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    Gene symbol
    CEH00_RS16955
    Gene description
    YbdK family carboxylate-amine ligase
    Locus tag
    CEH00_RS16955
    Gene type
    protein coding
    Organism
    Shigella boydii (strain: ESBL-W3-2, nat-host: Homo sapiens)
    Lineage
    Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
    Old locus tag
    CEH00_16975
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    Genomic context

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    NZ_NIYS01000106.1Genomic Context describing neighboring genes Neighboring gene type I toxin-antitoxin system toxin HokE Neighboring gene hypothetical protein Neighboring gene type I toxin-antitoxin system toxin HokE Neighboring gene DUF1158 domain-containing protein Neighboring gene MmcQ/YjbR family DNA-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_NIYS01000106.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YbdK is a carboxylate-amine ligase with a gamma-glutamyl:Cysteine ligase activity: crystal structure and enzymatic assays. Lehmann C, et al. Proteins, 2004 Aug 1. PMID 15211520

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    YbdK family carboxylate-amine ligase
    WP_001130618.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_NIYS01000106.1 Reference assembly

      Range
      120031..121149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_001130618.1 MULTISPECIES: YbdK family carboxylate-amine ligase [Enterobacteriaceae]

      See identical proteins and their annotated locations for WP_001130618.1

      UniProtKB/Swiss-Prot
      B6I0N0, B7M4R1
      UniProtKB/TrEMBL
      A0A066Q037, A0A6H2GH38, A0A9P2I7B3, A0A9Q5XXR7, A0AAD2UBW7, A0AAD2ZFE5, A0AAN1S2G5, A0AAN3SM17, A0AAN3V1E9
      Conserved Domains (1) summary
      PRK13516
      Location:1 → 372
      PRK13516; gamma-glutamyl:cysteine ligase; Provisional
    Nucleotide Protein
    Heading Accession and Version