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    MYCFIDRAFT_48847 hypothetical protein [ Pseudocercospora fijiensis CIRAD86 ]

    Gene ID: 19339842, updated on 17-May-2024

    Summary

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    Gene symbol
    MYCFIDRAFT_48847
    Gene description
    hypothetical protein
    Locus tag
    MYCFIDRAFT_48847
    See related
    FungiDB:MYCFIDRAFT_48847; VEuPathDB:MYCFIDRAFT_48847
    Gene type
    protein coding
    RNA name
    uncharacterized protein
    RefSeq status
    PROVISIONAL
    Organism
    Pseudocercospora fijiensis CIRAD86 (strain: CIRAD86, culture-collection: CBS:120258)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Dothideomycetidae; Mycosphaerellales; Mycosphaerellaceae; Pseudocercospora
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    Genomic context

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    See MYCFIDRAFT_48847 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    3

    NW_006921532.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006921532.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. Ohm RA, et al. PLoS Pathog, 2012. PMID 23236275, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_006921532.1 Reference assembly

      Range
      9376193..9380966 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007921864.1 → XP_007920055.1  uncharacterized protein MYCFIDRAFT_48847 [Pseudocercospora fijiensis CIRAD86]

      See identical proteins and their annotated locations for XP_007920055.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      N1Q8J6
      Conserved Domains (3) summary
      COG0557
      Location:521 → 1157
      VacB; Exoribonuclease R [Transcription]
      pfam09606
      Location:169 → 348
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam17216
      Location:401 → 527
      Rrp44_CSD1; Rrp44-like cold shock domain
    Protein Accession Links
    GenPept Link UniProtKB Link
    EME89215.1

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