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    LOC100181381 FAS-associated factor 1-like [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 100181381, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC100181381
    Gene description
    FAS-associated factor 1-like
    See related
    Ensembl:ENSCING00000007298
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See LOC100181381 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 8 NC_020173.2 (4116989..4121735, complement)

    Chromosome 8 - NC_020173.2Genomic Context describing neighboring genes Neighboring gene chromatin complexes subunit BAP18 Neighboring gene protein YIPF1 Neighboring gene solute carrier family 43 member 3-like Neighboring gene FAS-associated factor 1-like Neighboring gene basic salivary proline-rich protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020173.2 Chromosome 8 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FAS-associated factor 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020173.2 Reference KH Primary Assembly

      Range
      4116989..4121735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002125032.5 → XP_002125068.2  FAS-associated factor 1-like

      UniProtKB/TrEMBL
      F6S7J0
      Related
      ENSCINP00000014981
      Conserved Domains (3) summary
      cl00155
      Location:303 → 380
      UBQ; Ubiquitin-like proteins
      cl00388
      Location:88 → 217
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
      cl21478
      Location:203 → 274
      ATP-synt_B; ATP synthase B/B' CF(0)
    Nucleotide Protein
    Heading Accession and Version

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