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    LOC101267349 uncharacterized LOC101267349 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101267349, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC101267349
    Gene description
    uncharacterized LOC101267349
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101267349 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (78932619..78936495, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (83036383..83040234, complement)

    Chromosome 1 - NC_090800.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit B Neighboring gene DNA replication ATP-dependent helicase/nuclease JHS1 Neighboring gene uncharacterized LOC112940688 Neighboring gene very-long-chain aldehyde decarbonylase CER1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in maintenance of mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ctf18 RFC-like complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC101267349
    Names
    sister chromatid cohesion protein DCC1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

      Range
      78932619..78936495 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004229646.5 → XP_004229694.1  uncharacterized protein LOC101267349

      See identical proteins and their annotated locations for XP_004229694.1

      UniProtKB/TrEMBL
      A0A3Q7EJ81
      Conserved Domains (1) summary
      pfam09724
      Location:40 → 364
      DUF2036; Uncharacterized conserved protein (DUF2036)

    2. XM_069286877.1 → XP_069142978.1  uncharacterized protein LOC101267349

      UniProtKB/TrEMBL
      A0A3Q7EJ81
    Nucleotide Protein
    Heading Accession and Version

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