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    LOC101252544 defective in cullin neddylation protein AAR3 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101252544, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101252544
    Gene description
    defective in cullin neddylation protein AAR3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101252544 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 2 NC_090801.1 (66557599..66562678, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 2 NC_015439.3 (50876704..50881794, complement)

    Chromosome 2 - NC_090801.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101244638 Neighboring gene granule-bound starch synthase 2, chloroplastic/amyloplastic Neighboring gene uncharacterized LOC112940991 Neighboring gene E3 ubiquitin-protein ligase MPSR1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cullin family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein neddylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    defective in cullin neddylation protein AAR3
    Names
    DCN1-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090801.1 Reference SLM_r2.1 Primary Assembly

      Range
      66557599..66562678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004232170.5 → XP_004232218.1  defective in cullin neddylation protein AAR3

      UniProtKB/TrEMBL
      A0A3Q7F8Y8
      Conserved Domains (1) summary
      pfam03556
      Location:68 → 175
      Cullin_binding; Cullin binding
    Nucleotide Protein
    Heading Accession and Version

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