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    TRIM17 tripartite motif containing 17 [ Orcinus orca (killer whale) ]

    Gene ID: 101279765, updated on 8-Mar-2024

    Summary

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    Gene symbol
    TRIM17
    Gene description
    tripartite motif containing 17
    See related
    EnsemblRapid:ENSOORG00010021530
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Orcinus orca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM17 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 3 NC_064561.1 (15581782..15587026, complement)

    Chromosome 3 - NC_064561.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 2T11-like Neighboring gene uncharacterized LOC125963877 Neighboring gene tripartite motif containing 11 Neighboring gene H3.4 histone, cluster member Neighboring gene histone H2A type 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064561.1 Chromosome 3 Reference mOrcOrc1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOrcOrc1.1 Primary Assembly

    Genomic

    1. NC_064561.1 Reference mOrcOrc1.1 Primary Assembly

      Range
      15581782..15587026 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004284024.2 → XP_004284072.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM17

      Related
      ENSOORP00010028561.1, ENSOORT00010032249.1
      Conserved Domains (4) summary
      smart00336
      Location:98 → 136
      BBOX; B-Box-type zinc finger
      cd15812
      Location:297 → 472
      SPRY_PRY_TRIM17; PRY/SPRY domain of tripartite motif-binding protein 17 (TRIM17), also known as testis RING finger protein (terf)
      cl00817
      Location:136 → 187
      MM_CoA_mutase; Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM)-like family; contains proteins similar to MCM, and the large subunit of Streptomyces coenzyme B12-dependent isobutyryl-CoA mutase (ICM). MCM catalyzes the isomerization of ...
      cl17238
      Location:16 → 65
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    Nucleotide Protein
    Heading Accession and Version

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