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    VSIG4 V-set and immunoglobulin domain containing 4 [ Odobenus rosmarus divergens (Pacific walrus) ]

    Gene ID: 101384494, updated on 8-Mar-2024

    Summary

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    Gene symbol
    VSIG4
    Gene description
    V-set and immunoglobulin domain containing 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Odobenus rosmarus divergens (sub-species: divergens)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
    Orthologs
    human mouse all
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    Genomic context

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    See VSIG4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004451547.1 (51439..105868)

    NW_004451547.1Genomic Context describing neighboring genes Neighboring gene signal peptidase complex subunit 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004451547.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables complement component C3b binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of T cell proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of complement activation, alternative pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of interleukin-2 production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of macrophage activation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-set and immunoglobulin domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oros_1.0 Primary Assembly

    Genomic

    1. NW_004451547.1 Reference Oros_1.0 Primary Assembly

      Range
      51439..105868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004416623.1 → XP_004416680.1  V-set and immunoglobulin domain-containing protein 4 isoform X1

      Conserved Domains (2) summary
      cd00096
      Location:161 → 223
      Ig; Immunoglobulin domain
      cl11960
      Location:24 → 115
      Ig; Immunoglobulin domain

    2. XM_004416624.1 → XP_004416681.1  V-set and immunoglobulin domain-containing protein 4 isoform X2

      Conserved Domains (1) summary
      cl11960
      Location:24 → 115
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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