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    def peptide deformylase [ Pseudomonas yamanorum ]

    Gene ID: 93513799, updated on 12-Dec-2024

    Summary

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    Gene symbol
    def
    Gene description
    peptide deformylase
    Locus tag
    BLU46_RS15965
    Gene type
    protein coding
    Organism
    Pseudomonas yamanorum (strain: LMG 27247, type-material: type strain of Pseudomonas yamanorum)
    Lineage
    Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
    Old locus tag
    SAMN05216237_3297
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    Genomic context

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    Location:
    chromosome: I

    I - NZ_LT629793.1Genomic Context describing neighboring genes Neighboring gene DNA-processing protein DprA Neighboring gene peptidoglycan-binding protein Neighboring gene methionyl-tRNA formyltransferase Neighboring gene 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Neighboring gene Trk system potassium transporter TrkA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_LT629793.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete Genome Sequence of Pseudomonas fluorescens LBUM636, a Strain with Biocontrol Capabilities against Late Blight of Potato. Morrison CK, et al. Genome Announc, 2016 May 26. PMID 27231373, Free PMC Article
    2. Structure-function relationships within the peptide deformylase family. Evidence for a conserved architecture of the active site involving three conserved motifs and a metal ion. Meinnel T, et al. J Mol Biol, 1997 Apr 4. PMID 9126850

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    peptide deformylase
    WP_003213617.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_LT629793.1 Reference assembly

      Range
      3394368..3394874
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_003213617.1 MULTISPECIES: peptide deformylase [Pseudomonas]

      See identical proteins and their annotated locations for WP_003213617.1

      UniProtKB/TrEMBL
      A0A145XKX1, A0A1H2GQB7, A0A1R0GKN7, A0A2N7YA83
    Nucleotide Protein
    Heading Accession and Version