U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    chiP chitoporin [ Vibrio parahaemolyticus RIMD 2210633 ]

    Gene ID: 1188256, updated on 6-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    chiP
    Gene description
    chitoporin
    Locus tag
    VP_RS03750
    Gene type
    protein coding
    Organism
    Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VP0760
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Sequence:
    Chromosome: 1; NC_004603.1 (798857..799978)

    Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene DUF411 domain-containing protein Neighboring gene heavy metal translocating P-type ATPase Neighboring gene DUF2057 domain-containing protein Neighboring gene glutamate--tRNA ligase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_004603.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Chitoporin from the Marine Bacterium Vibrio harveyi: PROBING THE ESSENTIAL ROLES OF TRP136 AT THE SURFACE OF THE CONSTRICTION ZONE. Chumjan W, et al. J Biol Chem, 2015 Jul 31. PMID 26082491, Free PMC Article
    2. Chitin catabolism in the marine bacterium Vibrio furnissii. Identification and molecular cloning of a chitoporin. Keyhani NO, et al. J Biol Chem, 2000 Oct 20. PMID 10913115
    3. The Vibrio cholerae chitin utilization program. Meibom KL, et al. Proc Natl Acad Sci U S A, 2004 Feb 24. PMID 14983042, Free PMC Article
    4. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
    5. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    chitoporin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004603.1 Reference assembly

      Range
      798857..799978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005454008.1 MULTISPECIES: chitoporin [Vibrio]

      See identical proteins and their annotated locations for WP_005454008.1

      UniProtKB/TrEMBL
      A0A072FP25, Q87RL8
      Conserved Domains (1) summary
      cd00342
      Location:42 → 373
      gram_neg_porins; Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.