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    VP_RS04285 class I SAM-dependent methyltransferase [ Vibrio parahaemolyticus RIMD 2210633 ]

    Gene ID: 1188378, updated on 6-Oct-2023

    Summary

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    Gene symbol
    VP_RS04285
    Gene description
    class I SAM-dependent methyltransferase
    Locus tag
    VP_RS04285
    Gene type
    protein coding
    Organism
    Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VP0880
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    Genomic context

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    Location:
    chromosome: 1
    Sequence:
    Chromosome: 1; NC_004603.1 (912790..914481)

    Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD Neighboring gene tRNA-Arg Neighboring gene beta-ketoacyl-ACP synthase Neighboring gene 3-oxoacyl-ACP reductase FabG Neighboring gene hotdog family protein Neighboring gene beta-ketoacyl-[acyl-carrier-protein] synthase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004603.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
    2. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    class I SAM-dependent methyltransferase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004603.1 Reference assembly

      Range
      912790..914481
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005460549.1 class I SAM-dependent methyltransferase [Vibrio parahaemolyticus]

      See identical proteins and their annotated locations for WP_005460549.1

      UniProtKB/TrEMBL
      Q87RB7
      Conserved Domains (2) summary
      pfam13649
      Location:42 → 136
      Methyltransf_25; Methyltransferase domain
      cl00083
      Location:453 → 492
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
    Nucleotide Protein
    Heading Accession and Version

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