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    VP_RS04300 hotdog family protein [ Vibrio parahaemolyticus RIMD 2210633 ]

    Gene ID: 1188381, updated on 3-Dec-2024

    Summary

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    Gene symbol
    VP_RS04300
    Gene description
    hotdog family protein
    Locus tag
    VP_RS04300
    Gene type
    protein coding
    Organism
    Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VP0883
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    Genomic context

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    Location:
    chromosome: 1
    Sequence:
    Chromosome: 1; NC_004603.1 (916519..916983, complement)

    Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene class I SAM-dependent methyltransferase Neighboring gene beta-ketoacyl-ACP synthase Neighboring gene 3-oxoacyl-ACP reductase FabG Neighboring gene beta-ketoacyl-[acyl-carrier-protein] synthase family protein Neighboring gene DUF3261 domain-containing protein Neighboring gene MMPL family transporter Neighboring gene outer membrane lipoprotein carrier protein LolA Neighboring gene acyl-CoA thioesterase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004603.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
    2. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    hotdog family protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004603.1 Reference assembly

      Range
      916519..916983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005460561.1 MULTISPECIES: hotdog family protein [Vibrio harveyi group]

      See identical proteins and their annotated locations for WP_005460561.1

      UniProtKB/TrEMBL
      A0AAX0M8C6, Q87RB4
      Conserved Domains (1) summary
      cd01289
      Location:5 → 141
      FabA_like; Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
    Nucleotide Protein
    Heading Accession and Version

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