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    VP_RS23305 TRAP transporter large permease [ Vibrio parahaemolyticus RIMD 2210633 ]

    Gene ID: 1192400, updated on 3-Apr-2024

    Summary

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    Gene symbol
    VP_RS23305
    Gene description
    TRAP transporter large permease
    Locus tag
    VP_RS23305
    Gene type
    protein coding
    Organism
    Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VPA1704
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    Genomic context

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    Location:
    chromosome: 2
    Sequence:
    Chromosome: 2; NC_004605.1 (1822695..1823996)

    Chromosome 2 - NC_004605.1Genomic Context describing neighboring genes Neighboring gene TRAP transporter substrate-binding protein Neighboring gene TRAP transporter small permease Neighboring gene fructuronate reductase Neighboring gene glucuronate isomerase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004605.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tripartite ATP-independent periplasmic (TRAP) transporters in bacteria and archaea. Mulligan C, et al. FEMS Microbiol Rev, 2011 Jan. PMID 20584082
    2. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
    3. TRAP transporters: a new family of periplasmic solute transport systems encoded by the dctPQM genes of Rhodobacter capsulatus and by homologs in diverse gram-negative bacteria. Forward JA, et al. J Bacteriol, 1997 Sep. PMID 9287004, Free PMC Article
    4. TRAP transporters: an ancient family of extracytoplasmic solute-receptor-dependent secondary active transporters. Rabus R, et al. Microbiology (Reading), 1999 Dec. PMID 10627041
    5. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    TRAP transporter large permease

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004605.1 Reference assembly

      Range
      1822695..1823996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005461370.1 MULTISPECIES: TRAP transporter large permease [Vibrio]

      See identical proteins and their annotated locations for WP_005461370.1

      UniProtKB/TrEMBL
      A0A087IIT2, A0A0F5V757, A0A3Q0KZK8, Q7MBZ5, Q87FH5
      Conserved Domains (1) summary
      COG1593
      Location:52 → 429
      DctQ; TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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