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    tssB type VI secretion system contractile sheath small subunit [ Vibrio parahaemolyticus RIMD 2210633 ]

    Gene ID: 1188909, updated on 3-Apr-2024

    Summary

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    Gene symbol
    tssB
    Gene description
    type VI secretion system contractile sheath small subunit
    Locus tag
    VP_RS06810
    Gene type
    protein coding
    Organism
    Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VP1402
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    Genomic context

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    Location:
    chromosome: 1
    Sequence:
    Chromosome: 1; NC_004603.1 (1506285..1506791)

    Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene protein kinase family protein Neighboring gene type VI secretion system protein TssA Neighboring gene type VI secretion system contractile sheath large subunit Neighboring gene type VI secretion system baseplate subunit TssE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004603.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Remodelling of VipA/VipB tubules by ClpV-mediated threading is crucial for type VI protein secretion. Bönemann G, et al. EMBO J, 2009 Feb 18. PMID 19131969, Free PMC Article
    2. Structure of the type VI secretion system contractile sheath. Kudryashev M, et al. Cell, 2015 Feb 26. PMID 25723169, Free PMC Article
    3. Dissection of the TssB-TssC interface during type VI secretion sheath complex formation. Zhang XY, et al. PLoS One, 2013. PMID 24282569, Free PMC Article
    4. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
    5. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    type VI secretion system contractile sheath small subunit

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004603.1 Reference assembly

      Range
      1506285..1506791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005480589.1 MULTISPECIES: type VI secretion system contractile sheath small subunit [Vibrio]

      See identical proteins and their annotated locations for WP_005480589.1

      UniProtKB/TrEMBL
      A0A0L8TZI4, Q87PU9
      Conserved Domains (1) summary
      pfam05591
      Location:5 → 156
      T6SS_VipA; Type VI secretion system, VipA, VC_A0107 or Hcp2
    Nucleotide Protein
    Heading Accession and Version

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