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    INE72_RS12870 NigD-like protein [ Bacteroides caccae CL03T12C61 ]

    Gene ID: 75113743, updated on 1-Aug-2024

    Summary

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    Gene symbol
    INE72_RS12870
    Gene description
    NigD-like protein
    Locus tag
    INE72_RS12870
    Gene type
    protein coding
    Organism
    Bacteroides caccae CL03T12C61 (strain: CL03T12C61, nat-host: Homo sapiens)
    Lineage
    Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
    Old locus tag
    INE72_02550
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    Genomic context

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    NZ_CP072258.1Genomic Context describing neighboring genes Neighboring gene DUF4121 family protein Neighboring gene MIP family channel protein Neighboring gene sigma-70 family RNA polymerase sigma factor Neighboring gene outer membrane beta-barrel protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP072258.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering. García-Bayona L, et al. PLoS Genet, 2021 Apr. PMID 33901198, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    NigD-like protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP072258.1 Reference assembly

      Range
      3164911..3165633 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005680499.1 MULTISPECIES: NigD-like protein [Bacteroides]

      See identical proteins and their annotated locations for WP_005680499.1

      UniProtKB/TrEMBL
      A0A174JRQ3, I8V7T9
      Conserved Domains (2) summary
      pfam12667
      Location:43 → 104
      NigD_N; NigD-like N-terminal OB domain
      pfam17415
      Location:113 → 239
      NigD_C; NigD-like C-terminal beta sandwich domain
    Nucleotide Protein
    Heading Accession and Version

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