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    PSPTO_RS01615 sensor domain-containing diguanylate cyclase [ Pseudomonas syringae pv. tomato str. DC3000 ]

    Gene ID: 1181913, updated on 3-Dec-2024

    Summary

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    Gene symbol
    PSPTO_RS01615
    Gene description
    sensor domain-containing diguanylate cyclase
    Locus tag
    PSPTO_RS01615
    Gene type
    protein coding
    Organism
    Pseudomonas syringae pv. tomato str. DC3000 (strain: DC3000, pathovar: tomato, type-material: reference strain of Pseudomonas syringae group genomosp. 3)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
    Old locus tag
    PSPTO0304; PSPTO_0304
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    Genomic context

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    Sequence:
    NC_004578.1 (330437..331435, complement)

    NC_004578.1Genomic Context describing neighboring genes Neighboring gene 4-aminobutyrate--2-oxoglutarate transaminase Neighboring gene response regulator Neighboring gene delta-9 fatty acid desaturase DesA Neighboring gene phosphodiesterase DibA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004578.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The PAS fold. A redefinition of the PAS domain based upon structural prediction. Hefti MH, et al. Eur J Biochem, 2004 Mar. PMID 15009198
    2. PAS: a multifunctional domain family comes to light. Ponting CP, et al. Curr Biol, 1997 Nov 1. PMID 9382818
    3. GGDEF domain is homologous to adenylyl cyclase. Pei J, et al. Proteins, 2001 Feb 1. PMID 11119645
    4. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Buell CR, et al. Proc Natl Acad Sci U S A, 2003 Sep 2. PMID 12928499, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    sensor domain-containing diguanylate cyclase
    WP_005763415.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004578.1 Reference assembly

      Range
      330437..331435 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005763415.1 MULTISPECIES: sensor domain-containing diguanylate cyclase [Pseudomonas]

      See identical proteins and their annotated locations for WP_005763415.1

      UniProtKB/TrEMBL
      A0A0N0WWI9, A0A0N8QQD3, A0A0P9M504, A0A0P9MGX7, A0A0P9PXS7, A0A0Q0CSW6, A0A2K4U216, A0A3M3YTS9, A0A3M4S577, A0A3M5RL94, A0AAP6J9S0, A0AAW4DW12, Q88AT2
      Conserved Domains (2) summary
      cd01949
      Location:172 → 330
      GGDEF; Diguanylate-cyclase (DGC) or GGDEF domain
      pfam08447
      Location:66 → 154
      PAS_3; PAS fold
    Nucleotide Protein
    Heading Accession and Version

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