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    PSPTO_RS16405 M4 family metallopeptidase [ Pseudomonas syringae pv. tomato str. DC3000 ]

    Gene ID: 1184833, updated on 3-Dec-2024

    Summary

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    Gene symbol
    PSPTO_RS16405
    Gene description
    M4 family metallopeptidase
    Locus tag
    PSPTO_RS16405
    Gene type
    protein coding
    Organism
    Pseudomonas syringae pv. tomato str. DC3000 (strain: DC3000, pathovar: tomato, type-material: reference strain of Pseudomonas syringae group genomosp. 3)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
    Old locus tag
    PSPTO3176; PSPTO_3176
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    Genomic context

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    Sequence:
    NC_004578.1 (3567159..3568229)

    NC_004578.1Genomic Context describing neighboring genes Neighboring gene YqjD family protein Neighboring gene hypothetical protein Neighboring gene protealysin inhibitor emfourin Neighboring gene paraquat-inducible protein A Neighboring gene paraquat-inducible protein A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004578.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rational Design of Thermodynamic and Kinetic Binding Profiles by Optimizing Surface Water Networks Coating Protein-Bound Ligands. Krimmer SG, et al. J Med Chem, 2016 Dec 8. PMID 27933956
    2. The Zn-peptidase superfamily: functional convergence after evolutionary divergence. Makarova KS, et al. J Mol Biol, 1999 Sep 10. PMID 10493853
    3. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Buell CR, et al. Proc Natl Acad Sci U S A, 2003 Sep 2. PMID 12928499, Free PMC Article
    4. Evolutionary families of metallopeptidases. Rawlings ND, et al. Methods Enzymol, 1995. PMID 7674922

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    M4 family metallopeptidase
    WP_005766322.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004578.1 Reference assembly

      Range
      3567159..3568229
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005766322.1 MULTISPECIES: M4 family metallopeptidase [Pseudomonas]

      See identical proteins and their annotated locations for WP_005766322.1

      UniProtKB/TrEMBL
      A0A0N0WUX6, A0A0P9JUQ3, A0A3M3Z395, A0A3M4KGX2, A0AAP6J4U0, A0AAW4E6G2, Q880I1
      Conserved Domains (1) summary
      cd09597
      Location:67 → 334
      M4_TLP; Peptidase M4 family including thermolysin, protealysin, aureolysin, and neutral protease
    Nucleotide Protein
    Heading Accession and Version

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