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    HMPREF1534_RS06070 DEAD/DEAH box helicase [ Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 ]

    Gene ID: 60061400, updated on 9-Jan-2025

    Summary

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    Gene symbol
    HMPREF1534_RS06070
    Gene description
    DEAD/DEAH box helicase
    Locus tag
    HMPREF1534_RS06070
    Gene type
    protein coding
    Organism
    Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 (strain: DSM 17679, type-material: type strain of Bacteroides massiliensis)
    Lineage
    Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
    Old locus tag
    HMPREF1534_02695
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    Genomic context

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    NZ_KB905473.1Genomic Context describing neighboring genes Neighboring gene TIGR00341 family protein Neighboring gene S46 family peptidase Neighboring gene helix-turn-helix domain-containing protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_KB905473.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural insight into RNA recognition motifs: versatile molecular Lego building blocks for biological systems. Muto Y, et al. Wiley Interdiscip Rev RNA, 2012 Mar-Apr. PMID 22278943
    2. RNA recognition motifs: boring? Not quite. Cléry A, et al. Curr Opin Struct Biol, 2008 Jun. PMID 18515081
    3. DEAD-box helicases: posttranslational regulation and function. Gustafson EA, et al. Biochem Biophys Res Commun, 2010 Apr 23. PMID 20206133, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DEAD/DEAH box helicase
    WP_005942219.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_KB905473.1 Reference assembly

      Range
      14200..16131 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005942219.1 DEAD/DEAH box helicase [Phocaeicola massiliensis]

      See identical proteins and their annotated locations for WP_005942219.1

      UniProtKB/TrEMBL
      U6RF51
      Conserved Domains (4) summary
      PRK11634
      Location:3 → 606
      PRK11634; ATP-dependent RNA helicase DeaD; Provisional
      cd00079
      Location:219 → 343
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:4 → 206
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      pfam03880
      Location:476 → 547
      DbpA; DbpA RNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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