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    BLLJ_RS01365 Rid family detoxifying hydrolase [ Bifidobacterium longum subsp. longum JCM 1217 ]

    Gene ID: 69577508, updated on 13-Dec-2024

    Summary

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    Gene symbol
    BLLJ_RS01365
    Gene description
    Rid family detoxifying hydrolase
    Locus tag
    BLLJ_RS01365
    Gene type
    protein coding
    Organism
    Bifidobacterium longum subsp. longum JCM 1217 (strain: JCM 1217, sub-species: longum, type-material: type strain of Bifidobacterium longum)
    Lineage
    Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
    Old locus tag
    BLLJ_0265
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    Genomic context

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    Sequence:
    NC_015067.1 (341316..341705)

    NC_015067.1Genomic Context describing neighboring genes Neighboring gene CYTH domain-containing protein Neighboring gene tRNA-Arg Neighboring gene lysophospholipid acyltransferase family protein Neighboring gene NAD(P)H-dependent glycerol-3-phosphate dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_015067.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In the absence of RidA, endogenous 2-aminoacrylate inactivates alanine racemases by modifying the pyridoxal 5'-phosphate cofactor. Flynn JM, et al. J Bacteriol, 2013 Aug. PMID 23749972, Free PMC Article
    2. The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family. Burman JD, et al. BMC Struct Biol, 2007 May 16. PMID 17506874, Free PMC Article
    3. Bifidobacteria can protect from enteropathogenic infection through production of acetate. Fukuda S, et al. Nature, 2011 Jan 27. PMID 21270894
    4. Genomic and experimental evidence for multiple metabolic functions in the RidA/YjgF/YER057c/UK114 (Rid) protein family. Niehaus TD, et al. BMC Genomics, 2015 May 15. PMID 25975565, Free PMC Article
    5. Conserved YjgF protein family deaminates reactive enamine/imine intermediates of pyridoxal 5'-phosphate (PLP)-dependent enzyme reactions. Lambrecht JA, et al. J Biol Chem, 2012 Jan 27. PMID 22094463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    Rid family detoxifying hydrolase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_015067.1 Reference assembly

      Range
      341316..341705
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_007054771.1 MULTISPECIES: Rid family detoxifying hydrolase [Bifidobacterium]

      See identical proteins and their annotated locations for WP_007054771.1

      UniProtKB/TrEMBL
      A0A075N963, A0A087B1G0, A0A1S2W257, A0A4S5B7I4, A0A6I2T356, A0AAV3FLZ4, B3DTU2, B7GU01, D6ZXX3, E5XWT3, E8MP93, Q8G7C1
      Conserved Domains (1) summary
      cl10015
      Location:5 → 129
      YjgF_YER057c_UK114_family; YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no ...
    Nucleotide Protein
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