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    ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ Phocaeicola dorei ]

    Gene ID: 93445438, updated on 27-Aug-2024

    Summary

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    Gene symbol
    ispF
    Gene description
    2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Locus tag
    GKD17_RS01915
    Gene type
    protein coding
    Organism
    Phocaeicola dorei (strain: DSM 17855, nat-host: Homo sapiens, culture-collection: DSM:17855, type-material: type strain of Bacteroides dorei)
    Lineage
    Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
    Old locus tag
    GKD17_01955
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    Genomic context

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    NZ_CP046176.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor Neighboring gene redox-sensing transcriptional repressor Rex Neighboring gene fumarylacetoacetate hydrolase family protein Neighboring gene 1,4-dihydroxy-2-naphthoate polyprenyltransferase Neighboring gene metallophosphoesterase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP046176.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Synthesis of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate and kinetic studies of Mycobacterium tuberculosis IspF. Narayanasamy P, et al. Chem Biol, 2010 Feb 26. PMID 20189102, Free PMC Article
    2. Biosynthesis of terpenoids: YgbB protein converts 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate to 2C-methyl-D-erythritol 2,4-cyclodiphosphate. Herz S, et al. Proc Natl Acad Sci U S A, 2000 Mar 14. PMID 10694574, Free PMC Article
    3. Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering. García-Bayona L, et al. PLoS Genet, 2021 Apr. PMID 33901198, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    WP_007831305.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP046176.1 Reference assembly

      Range
      462904..463386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_007831305.1 MULTISPECIES: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Phocaeicola]

      See identical proteins and their annotated locations for WP_007831305.1

      UniProtKB/TrEMBL
      A0A076IU31, B6VSL4, C3RG24, I9Q7W6, I9QSZ2
    Nucleotide Protein
    Heading Accession and Version