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    dapF diaminopimelate epimerase [ Pantoea agglomerans ]

    Gene ID: 66823896, updated on 1-Aug-2024

    Summary

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    Gene symbol
    dapF
    Gene description
    diaminopimelate epimerase
    Locus tag
    I6L77_RS01930
    Gene type
    protein coding
    Organism
    Pantoea agglomerans (strain: FDAARGOS 1447, culture-collection: DSM:3493, type-material: type strain of Pantoea agglomerans)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea agglomerans group
    Old locus tag
    I6L77_01930
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    Genomic context

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    NZ_CP077366.1Genomic Context describing neighboring genes Neighboring gene DNA helicase II Neighboring gene 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB Neighboring gene DUF484 domain-containing protein Neighboring gene tyrosine recombinase XerC Neighboring gene lipoprotein Neighboring gene class I adenylate cyclase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP077366.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete Genome Sequence of Pantoea agglomerans TH81, Isolated from a Permafrost Thaw Gradient. Humphrey J, et al. Microbiol Resour Announc, 2019 Jan. PMID 30637402, Free PMC Article
    2. Characterization of Mycobacterium tuberculosis diaminopimelic acid epimerase: paired cysteine residues are crucial for racemization. Usha V, et al. FEMS Microbiol Lett, 2008 Mar. PMID 18269631
    3. Dimerization of bacterial diaminopimelate epimerase is essential for catalysis. Hor L, et al. J Biol Chem, 2013 Mar 29. PMID 23426375, Free PMC Article
    4. Chemical mechanism of Haemophilus influenzae diaminopimelate epimerase. Koo CW, et al. Biochemistry, 1999 Apr 6. PMID 10194362

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    diaminopimelate epimerase
    WP_010257326.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP077366.1 Reference assembly

      Range
      426231..427055 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_010257326.1 MULTISPECIES: diaminopimelate epimerase [Pantoea]

      See identical proteins and their annotated locations for WP_010257326.1

      UniProtKB/TrEMBL
      A0AAJ5V5U0
      Conserved Domains (1) summary
      PRK00450
      Location:1 → 274
      dapF; diaminopimelate epimerase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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