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    ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [ Xanthomonas citri pv. citri ]

    Gene ID: 66910134, updated on 3-Dec-2024

    Summary

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    Gene symbol
    ispE
    Gene description
    4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
    Locus tag
    AMD14_RS05330
    Gene type
    protein coding
    Organism
    Xanthomonas citri pv. citri (strain: MN12, pathovar: citri, nat-host: citrus spp., sub-species: citri)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas
    Old locus tag
    J164_01070; J164_RS05355
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    Genomic context

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    NZ_CP008998.1Genomic Context describing neighboring genes Neighboring gene peptide chain release factor 1 Neighboring gene pseudo Neighboring gene tetratricopeptide repeat protein Neighboring gene lipoprotein insertase outer membrane protein LolB Neighboring gene tRNA-Gln Neighboring gene ribose-phosphate diphosphokinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP008998.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pacbio sequencing of copper-tolerant Xanthomonas citri reveals presence of a chimeric plasmid structure and provides insights into reassortment and shuffling of transcription activator-like effectors among X. citri strains. Gochez AM, et al. BMC Genomics, 2018 Jan 4. PMID 29301493, Free PMC Article
    2. Biosynthesis of terpenoids: YchB protein of Escherichia coli phosphorylates the 2-hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. Lüttgen H, et al. Proc Natl Acad Sci U S A, 2000 Feb 1. PMID 10655484, Free PMC Article
    3. Chromoplast development in ripening tomato fruit: identification of cDNAs for chromoplast-targeted proteins and characterization of a cDNA encoding a plastid-localized low-molecular-weight heat shock protein. Lawrence SD, et al. Plant Mol Biol, 1997 Feb. PMID 9049268

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
    WP_011050637.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP008998.1 Reference assembly

      Range
      1110928..1111815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_011050637.1 MULTISPECIES: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Xanthomonas]

      See identical proteins and their annotated locations for WP_011050637.1

      UniProtKB/Swiss-Prot
      Q8PNU1
      UniProtKB/TrEMBL
      A0A0U5FCX4, A0A1T1P7H4, A0A7S6YYM7, A0A9X9IG33, A0AAX0HW40, M4TT05
      Conserved Domains (1) summary
      PRK00343
      Location:9 → 280
      ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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