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    rlpA endolytic peptidoglycan transglycosylase RlpA [ Pectobacterium atrosepticum ]

    Gene ID: 57208111, updated on 30-Mar-2024

    Summary

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    Gene symbol
    rlpA
    Gene description
    endolytic peptidoglycan transglycosylase RlpA
    Locus tag
    GZ59_RS06400
    Gene type
    protein coding
    Organism
    Pectobacterium atrosepticum (strain: 21A, nat-host: Solanum tuberosum)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium
    Old locus tag
    GZ59_13280
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    Genomic context

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    NZ_CP009125.1Genomic Context describing neighboring genes Neighboring gene DUF493 family protein YbeD Neighboring gene D-alanyl-D-alanine carboxypeptidase DacA Neighboring gene peptidoglycan glycosyltransferase MrdB Neighboring gene peptidoglycan DD-transpeptidase MrdA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP009125.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals. Nikolaichik Y, et al. PeerJ, 2016. PMID 27257541, Free PMC Article
    2. Genome Sequence of Pectobacterium atrosepticum Strain 21A. Nikolaichik Y, et al. Genome Announc, 2014 Sep 18. PMID 25237028, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    endolytic peptidoglycan transglycosylase RlpA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP009125.1 Reference assembly

      Range
      1454509..1455624 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_011092888.1 endolytic peptidoglycan transglycosylase RlpA [Pectobacterium atrosepticum]

      See identical proteins and their annotated locations for WP_011092888.1

      UniProtKB/TrEMBL
      Q6D7M4
      Conserved Domains (1) summary
      PRK10672
      Location:1 → 368
      PRK10672; endolytic peptidoglycan transglycosylase RlpA
    Nucleotide Protein
    Heading Accession and Version

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