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    VF_RS16840 porin family protein [ Aliivibrio fischeri ES114 ]

    Gene ID: 54165995, updated on 27-Aug-2024

    Summary

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    Gene symbol
    VF_RS16840
    Gene description
    porin family protein
    Locus tag
    VF_RS16840
    Gene type
    protein coding
    Organism
    Aliivibrio fischeri ES114 (strain: ES114)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio
    Old locus tag
    VF_A0674; VFA0674
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    Genomic context

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    Location:
    chromosome: II
    Sequence:
    Chromosome: II; NC_006841.2 (744925..745473, complement)

    Chromosome II - NC_006841.2Genomic Context describing neighboring genes Neighboring gene TonB-dependent siderophore receptor Neighboring gene putative transporter Neighboring gene hypothetical protein Neighboring gene helix-turn-helix domain-containing protein Neighboring gene methyl-accepting chemotaxis protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_006841.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions. Mandel MJ, et al. BMC Genomics, 2008 Mar 25. PMID 18366731, Free PMC Article
    2. Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. Ruby EG, et al. Proc Natl Acad Sci U S A, 2005 Feb 22. PMID 15703294, Free PMC Article
    3. Porins and small-molecule translocation across the outer membrane of Gram-negative bacteria. Vergalli J, et al. Nat Rev Microbiol, 2020 Mar. PMID 31792365
    4. Outer Membrane Porins. Masi M, et al. Subcell Biochem, 2019. PMID 31214985

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    porin family protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_006841.2 Reference assembly

      Range
      744925..745473 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_011263508.1 porin family protein [Aliivibrio fischeri]

      See identical proteins and their annotated locations for WP_011263508.1

      UniProtKB/TrEMBL
      Q5DZQ2
    Nucleotide Protein
    Heading Accession and Version