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    E5165_RS03660 polysaccharide deacetylase family protein [ Flavobacterium psychrophilum ]

    Gene ID: 66552180, updated on 31-Mar-2024

    Summary

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    Gene symbol
    E5165_RS03660
    Gene description
    polysaccharide deacetylase family protein
    Locus tag
    E5165_RS03660
    Gene type
    protein coding
    Organism
    Flavobacterium psychrophilum (strain: 160401-1/5N, nat-host: rainbow trout)
    Lineage
    Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium
    Old locus tag
    E5165_06285
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    Genomic context

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    NZ_CP039120.2Genomic Context describing neighboring genes Neighboring gene glycosyltransferase family 87 protein Neighboring gene glycosyltransferase family 2 protein Neighboring gene glycosyltransferase family 2 protein Neighboring gene glycosyltransferase family 1 protein Neighboring gene glycosyl transferase family 90

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP039120.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete Genome Sequence of Flavobacterium psychrophilum Strain CSF259-93, Used To Select Rainbow Trout for Increased Genetic Resistance against Bacterial Cold Water Disease. Wiens GD, et al. Genome Announc, 2014 Sep 18. PMID 25237017, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    polysaccharide deacetylase family protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP039120.2 Reference assembly

      Range
      824087..824860
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_011963745.1 polysaccharide deacetylase family protein [Flavobacterium psychrophilum]

      See identical proteins and their annotated locations for WP_011963745.1

      UniProtKB/TrEMBL
      A0A076P344, A6H027
      Conserved Domains (1) summary
      cd10941
      Location:1 → 237
      CE4_PuuE_HpPgdA_like_2; Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA)
    Nucleotide Protein
    Heading Accession and Version

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