U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    RPB1 DNA-directed RNA polymerase II subunit RPB1 [ Nakaseomyces glabratus ]

    Gene ID: 2889258, updated on 6-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    RPB1
    Gene description
    DNA-directed RNA polymerase II subunit RPB1
    Locus tag
    GVI51_I03553
    See related
    FungiDB:GVI51_I03553; VEuPathDB:GVI51_I03553
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Nakaseomyces glabratus (strain: ATCC 2001, nat-host: Homo sapiens, culture-collection: ATCC:2001, type-material: type material of Cryptococcus glabratus)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RPB1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_088959.1 (330606..335753, complement)

    Chromosome I - NC_088959.1Genomic Context describing neighboring genes Neighboring gene cardiolipin synthase Neighboring gene biotin--[acetyl-CoA-carboxylase] ligase BPL1 Neighboring gene uncharacterized protein Neighboring gene glucose sensor

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_088959.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays. Xu Z, et al. Mol Microbiol, 2020 Jun. PMID 32068314
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    • CAGL0I03828g
      RNA polymerase II largest subunit

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-directed RNA polymerase II subunit RPB1
    XP_447415.1
    • CAGL0I03828g
      RNA polymerase II largest subunit

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_088959.1 Reference assembly

      Range
      330606..335753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_447415.1 → XP_447415.1  DNA-directed RNA polymerase II subunit RPB1 [Nakaseomyces glabratus]

      See identical proteins and their annotated locations for XP_447415.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0W0CPN1, Q6FQS9
      Conserved Domains (3) summary
      cd02584
      Location:1035 → 1446
      RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
      cd02733
      Location:15 → 853
      RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
      pfam04992
      Location:873 → 1056
      RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.