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    ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO [ Edwardsiella ictaluri ]

    Gene ID: 69539379, updated on 31-Mar-2024

    Summary

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    Gene symbol
    ycaO
    Gene description
    30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Locus tag
    DB741_RS11280
    Gene type
    protein coding
    Organism
    Edwardsiella ictaluri (strain: S07-698, nat-host: Ictalurus punctatus)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella
    Old locus tag
    DB741_11270
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    Genomic context

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    NZ_CP084521.1Genomic Context describing neighboring genes Neighboring gene 3-phosphoserine/phosphohydroxythreonine transaminase Neighboring gene L-asparaginase 2 Neighboring gene formate transporter FocA Neighboring gene formate C-acetyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP084521.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic and transcriptomic approach reveals new insight into beta-methylthiolation of Escherichia coli ribosomal protein S12. Strader MB, et al. Mol Cell Proteomics, 2011 Mar. PMID 21169565, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    30S ribosomal protein S12 methylthiotransferase accessory factor YcaO

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP084521.1 Reference assembly

      Range
      2371451..2373211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_015871745.1 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO [Edwardsiella ictaluri]

      See identical proteins and their annotated locations for WP_015871745.1

      UniProtKB/TrEMBL
      C5BBS6
      Conserved Domains (2) summary
      pfam18381
      Location:407 → 582
      YcaO_C; YcaO cyclodehydratase C-terminal domain
      cl19253
      Location:11 → 404
      YcaO; YcaO cyclodehydratase, ATP-ad Mg2+-binding
    Nucleotide Protein
    Heading Accession and Version

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