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    boca LDLR chaperone boca [ Bombyx mori (domestic silkworm) ]

    Gene ID: 101745690, updated on 24-May-2024

    Summary

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    Gene symbol
    boca
    Gene description
    LDLR chaperone boca
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bombyx mori
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
    Orthologs
    fruit fly all
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    Genomic context

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    See boca in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 8 NC_085114.1 (7178880..7358941, complement)
    103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 8 NC_051365.1 (7150868..7153735, complement)

    Chromosome 8 - NC_085114.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing protein 7 lap1 Neighboring gene Replication protein A2 Neighboring gene Spindle assembly abnormal 6 Neighboring gene protein spinster Neighboring gene uncharacterized LOC134199252 Neighboring gene cell cycle checkpoint kinase 2 Neighboring gene allatostatin C Neighboring gene uncharacterized LOC101746311 Neighboring gene ribonucleic acid binding protein S1 Neighboring gene fibrosin-1-like protein Neighboring gene NADH-ubiquinone oxidoreductase Fe-S protein 7 Neighboring gene Rad17 checkpoint clamp loader component

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
    2. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LDLR chaperone boca

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3026992v2 Primary Assembly

    Genomic

    1. NC_085114.1 Reference ASM3026992v2 Primary Assembly

      Range
      7178880..7358941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_062669716.1 → XP_062525700.1  LDLR chaperone boca

      UniProtKB/TrEMBL
      A0A8R2AQU8

    2. XM_004932046.5 → XP_004932103.1  LDLR chaperone boca

      See identical proteins and their annotated locations for XP_004932103.1

      UniProtKB/TrEMBL
      A0A8R2AQU8
      Conserved Domains (1) summary
      pfam10185
      Location:29 → 181
      Mesd; Chaperone for wingless signalling and trafficking of LDL receptor
    Nucleotide Protein
    Heading Accession and Version

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