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    CAPNS2 calpain small subunit 2 [ Gallus gallus (chicken) ]

    Gene ID: 770982, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CAPNS2provided by CGNC
    Official Full Name
    calpain small subunit 2provided by CGNC
    Primary source
    CGNC:28988
    See related
    Ensembl:ENSGALG00010025257
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    CAPNS1
    Orthologs
    human mouse all
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    Genomic context

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    See CAPNS2 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (3307003..3308232, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (3649376..3650605, complement)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 12 member 4 Neighboring gene uncharacterized LOC101752262 Neighboring gene solute carrier family 6 member 2 Neighboring gene uncharacterized LOC107054270 Neighboring gene lysophosphatidylcholine acyltransferase 2 Neighboring gene matrix metallopeptidase 2 Neighboring gene iroquois homeobox 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain small subunit 2
    Names
    calpain, small subunit 1
    XP_004944228.1
    XP_040536954.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3307003..3308232 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004944171.4 → XP_004944228.1  calpain small subunit 2

      UniProtKB/TrEMBL
      A0A8V1A6R7
      Related
      ENSGALP00010038070.1, ENSGALT00010061645.1
      Conserved Domains (1) summary
      cd16188
      Location:80 → 248
      EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3649376..3650605 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040681020.2 → XP_040536954.1  calpain small subunit 2

      UniProtKB/TrEMBL
      A0A8V1A6R7
      Conserved Domains (1) summary
      cd16188
      Location:80 → 248
      EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2
    Nucleotide Protein
    Heading Accession and Version

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