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    PTSG_07361 plasminogen [ Salpingoeca rosetta ]

    Gene ID: 16071422, updated on 14-Dec-2023

    Summary

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    Gene symbol
    PTSG_07361
    Gene description
    plasminogen
    Locus tag
    PTSG_07361
    Gene type
    protein coding
    RNA name
    plasminogen
    RefSeq status
    PROVISIONAL
    Organism
    Salpingoeca rosetta (strain: ATCC 50818, culture-collection: ATCC:50818)
    Lineage
    Eukaryota; Choanoflagellida; Craspedida; Salpingoecidae; Salpingoeca
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    Genomic context

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    See PTSG_07361 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    19

    NW_004754912.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004754912.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plasminogen

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004754912.1 Reference assembly

      Range
      410344..429995
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004990802.1 → XP_004990859.1  plasminogen [Salpingoeca rosetta]

      See identical proteins and their annotated locations for XP_004990859.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F2UJ71
      Conserved Domains (7) summary
      smart00130
      Location:359 → 432
      KR; Kringle domain
      smart00194
      Location:4459 → 4719
      PTPc; Protein tyrosine phosphatase, catalytic domain
      smart00327
      Location:45 → 189
      VWA; von Willebrand factor (vWF) type A domain
      cd00047
      Location:4485 → 4719
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
      cd00185
      Location:945 → 985
      TNFRSF; CRD2 [structural motif]
      pfam01302
      Location:4351 → 4414
      CAP_GLY; CAP-Gly domain
      cl22855
      Location:934 → 1057
      TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
    Protein Accession Links
    GenPept Link UniProtKB Link
    EGD77019.1

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