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    PTSG_07443 NHL repeat-containing protein [ Salpingoeca rosetta ]

    Gene ID: 16071509, updated on 14-Dec-2023

    Summary

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    Gene symbol
    PTSG_07443
    Gene description
    NHL repeat-containing protein
    Locus tag
    PTSG_07443
    Gene type
    protein coding
    RNA name
    NHL repeat-containing protein
    RefSeq status
    PROVISIONAL
    Organism
    Salpingoeca rosetta (strain: ATCC 50818, culture-collection: ATCC:50818)
    Lineage
    Eukaryota; Choanoflagellida; Craspedida; Salpingoecidae; Salpingoeca
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    Genomic context

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    See PTSG_07443 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    30

    NW_004754912.1Genomic Context describing neighboring genes Neighboring gene argininosuccinate lyase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004754912.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NHL repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004754912.1 Reference assembly

      Range
      930812..941664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004990890.1 → XP_004990947.1  NHL repeat-containing protein [Salpingoeca rosetta]

      See identical proteins and their annotated locations for XP_004990947.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F2UIQ9
      Conserved Domains (4) summary
      cd00033
      Location:395 → 451
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
      cd05819
      Location:1137 → 1177
      NHL; NHL repeat [structural motif]
      pfam14704
      Location:43 → 193
      DERM; Dermatopontin
      cl18310
      Location:1112 → 1453
      NHL; NHL repeat unit of beta-propeller proteins
    Protein Accession Links
    GenPept Link UniProtKB Link
    EGD77108.1

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