U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC101753133 auxin-responsive protein IAA6 [ Setaria italica (foxtail millet) ]

    Gene ID: 101753133, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101753133
    Gene description
    auxin-responsive protein IAA6
    Locus tag
    SETIT_001894mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101753133 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) V NC_028454.1 (36396106..36399384)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675965.1 (36396934..36400189)

    Chromosome V - NC_028454.1Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A thioesterase 13 Neighboring gene lysM domain receptor-like kinase 3 Neighboring gene uncharacterized LOC105914511 Neighboring gene rRNA methyltransferase 1, mitochondrial Neighboring gene probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    auxin-responsive protein IAA6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028454.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      36396106..36399384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004969848.3 → XP_004969905.1  auxin-responsive protein IAA6

      UniProtKB/TrEMBL
      K3XJ21, K3XJU2
      Conserved Domains (1) summary
      pfam02309
      Location:165 → 328
      AUX_IAA; AUX/IAA family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases