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    WHRN whirlin [ Myotis brandtii (Brandt's bat) ]

    Gene ID: 102256656, updated on 30-Mar-2024

    Summary

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    Gene symbol
    WHRN
    Gene description
    whirlin
    Locus tag
    D623_10028454
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Myotis brandtii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
    Orthologs
    human mouse all
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    Genomic context

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    See WHRN in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current ASM41265v1 (GCF_000412655.1) Unplaced Scaffold NW_005370558.1 (1687330..1757322, complement)

    NW_005370558.1Genomic Context describing neighboring genes Neighboring gene AT-hook transcription factor Neighboring gene 60S ribosomal protein L39 Neighboring gene uncharacterized LOC106723852 Neighboring gene ATPase H+ transporting V1 subunit G1 Neighboring gene transmembrane protein 268

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005370558.1 Unplaced Scaffold Reference ASM41265v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in auditory receptor cell stereocilium organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor inner segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of stereocilia ankle link complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stereocilium tip IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    whirlin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Myotis brandtii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM41265v1

    Genomic

    1. NW_005370558.1 Reference ASM41265v1

      Range
      1687330..1757322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014528888.1 → XP_014384374.1  whirlin

      UniProtKB/TrEMBL
      S7NHJ0
      Conserved Domains (3) summary
      cd00992
      Location:137 → 217
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07357
      Location:279 → 366
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
      pfam15735
      Location:507 → 595
      DUF4683; Domain of unknown function (DUF4683)
    Nucleotide Protein
    Heading Accession and Version

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