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    Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [ Chinchilla lanigera (long-tailed chinchilla) ]

    Gene ID: 102029115, updated on 16-Nov-2024

    Summary

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    Gene symbol
    Lsm2
    Gene description
    LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
    See related
    RGD:8752745
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chinchilla lanigera
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
    Orthologs
    human mouse all
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    Genomic context

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    See Lsm2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955437.1 (321367..325556, complement)

    NW_004955437.1Genomic Context describing neighboring genes Neighboring gene von Willebrand factor A domain containing 7 Neighboring gene valyl-tRNA synthetase 1 Neighboring gene heat shock 70 kDa protein 1-like Neighboring gene pre-mRNA-splicing regulator WTAP pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004955437.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm2
    Names
    LSM2 homolog, U6 small nuclear RNA associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ChiLan1.0 Primary Assembly

    Genomic

    1. NW_004955437.1 Reference ChiLan1.0 Primary Assembly

      Range
      321367..325556 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005389388.2 → XP_005389445.1  U6 snRNA-associated Sm-like protein LSm2

      Conserved Domains (1) summary
      cd01725
      Location:95 → 183
      LSm2; Like-Sm protein 2
    Nucleotide Protein
    Heading Accession and Version

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